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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20241505_20242042_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20241505 - 20242042
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGCCG
5'SS Class:
major
3'SS Sequence:
TGTGCTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTGTCCTTACCC
Flanking Amino Acid:
LCNDFERQVKEIEAKYNKKM
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
57.9
46.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
74.4
0.55
0.9
65.7
40.9
Minor 5ss
26.5
-2.7
3
31.2
42.4
Minor BPS
68.3
0.55
1.7
73.81
43.4

Associated Gene:

Gene:
GAS8
Ensembl Gene ID:
ENSAPLG00000003262
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003329
20240495 - 20246443
5949