About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20242675_20243036_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20242675 - 20243036
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCACTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CACTCTTTAACT
Flanking Amino Acid:
HYDMDKEALTNTKARLKVIQ
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.1
43.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
79.9
0.67
0.8
73.5
30.2
Minor 5ss
31
-2.2
3
42.1
44.5
Minor BPS
75.8
0.89
1.2
80.6
41.6

Associated Gene:

Gene:
GAS8
Ensembl Gene ID:
ENSAPLG00000003262
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003329
20240495 - 20246443
5949