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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20246030_20246293_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20246030 - 20246293
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGAACAT
U12 Branch Point Sequence:
CAGAGCAGAACA
Flanking Amino Acid:
LQFQLARVCKAHNDMLQTLE
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
48.8
-0
1.2
55.1
40.4
Major PPT
85.9
0.81
0.8
77.4
36.9
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
40.7
-0.7
2
47.25
42.1

Associated Gene:

Gene:
GAS8
Ensembl Gene ID:
ENSAPLG00000003262
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003329
20240495 - 20246443
5949