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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20247375_20247640_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20247375 - 20247640
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGCCCACA
5'SS Class:
weak_major
3'SS Sequence:
TGCTTTTGGGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGGACAG
U12 Branch Point Sequence:
GGAAGCAGGACA
Flanking Amino Acid:
RAGPPALTAPPL
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.1
0.07
1.2
49.7
43
Major BPS
38
-0.7
1.4
38.2
41.7
Major PPT
49.3
-0
1.8
60.8
44.7
Minor 5ss
38.3
-1.3
3
40.8
45.2
Minor BPS
38.1
-0.9
2
43.72
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003171
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048252
20246641 - 20247648
1008