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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20274239_20274736_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20274239 - 20274736
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATATCATGGACT
Flanking Amino Acid:
EDYYKRVCPQILGLLHIQDK
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.9
35.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89
0.88
0.7
81.1
30.9
Minor 5ss
28.5
-2.5
3.4
40.8
45.6
Minor BPS
56.7
0.29
1.8
76.74
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019647
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039568
20270996 - 20275559
4564