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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20274900_20275455_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20274900 - 20275455
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCA
5'SS Class:
major
3'SS Sequence:
TCTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AGGTGCTGATAT
Flanking Amino Acid:
APLLRCSDAAEIAAEDLSAG
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
66.7
39.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
35
-1.7
3.5
47.9
47.8
Minor BPS
42.3
-0.5
2.1
57.49
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019647
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039568
20270996 - 20275559
4564