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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20299057_20299137_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20299057 - 20299137
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
CCCCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTCTCCTCACCT
Flanking Amino Acid:
PVKEAQNDNKGSDSDSEGEN
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
54.2
45
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
72.8
0.51
0.8
64.3
31
Minor 5ss
25.1
-2.9
3.1
22.5
37.5
Minor BPS
57.9
0.33
1.9
75.75
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021695
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029544
20298601 - 20301564
2964