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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20299200_20299372_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20299200 - 20299372
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
CGCCGCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GGGCTCTCACCG
Flanking Amino Acid:
EKKKLQEQLMGAIMMEKPNV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.2
58.9
40
Major BPS
72.7
0.56
1
75
30.1
Major PPT
64.8
0.33
0.9
56.9
33.4
Minor 5ss
27.7
-2.6
3.7
31.5
43.1
Minor BPS
43
-0.6
1.8
42.32
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021695
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029544
20298601 - 20301564
2964