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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20299493_20299655_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20299493 - 20299655
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGTC
5'SS Class:
major
3'SS Sequence:
GGCTCTGTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
GAAGCTTTGACA
Flanking Amino Acid:
LPIKFPHLFTGKRTPWRGIL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
69.8
35
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
67.4
0.39
1
60.6
40.2
Minor 5ss
30
-2.3
3.5
42.5
44.6
Minor BPS
57.5
0.23
1.4
60.47
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021695
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029544
20298601 - 20301564
2964