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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20299813_20299948_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20299813 - 20299948
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
CCTCTGTGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACCCAC
U12 Branch Point Sequence:
GCTTGGGGACCC
Flanking Amino Acid:
LMSKWLGESEKLVKNLFELA
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
72.5
39.9
Major BPS
44.8
-0.3
1.3
50.1
36.7
Major PPT
62.8
0.29
1.1
56.5
43.4
Minor 5ss
47.3
-0.3
2.9
64.8
40.8
Minor BPS
30.7
-1.4
2.7
43.01
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021695
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029544
20298601 - 20301564
2964