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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20300301_20300422_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20300301 - 20300422
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
GTGCCACGCTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
ACCCCCTGACCC
Flanking Amino Acid:
PWVLDSAIRRRFEKRIYIPL
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
58.9
0.2
1
54.7
40.4
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
48
-0.1
1.8
54.95
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021695
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029544
20298601 - 20301564
2964