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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20301926_20302000_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20301926 - 20302000
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGGCTC
5'SS Class:
major
3'SS Sequence:
TCTCCCACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
GCTCTCCCACCC
Flanking Amino Acid:
VPRHWAVHVSGVDESGQPVS
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.3
45.5
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
71.7
0.49
0.8
62.6
33.1
Minor 5ss
34.7
-1.7
3.6
50.9
45.8
Minor BPS
40.7
-0.7
2
49.19
40.7

Associated Gene:

Gene:
PDF
Ensembl Gene ID:
ENSAPLG00000025097
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033651
20301462 - 20303795
2334