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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20307126_20307207_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20307126 - 20307207
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCGGAA
U12 Branch Point Sequence:
TTTTTCTTCCCC
Flanking Amino Acid:
VVYSMADVPLGFGVAAKSTQ
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.5
40.7
Major BPS
46.8
-0.2
1.4
43.1
41.8
Major PPT
87.5
0.84
0.7
81.1
30.9
Minor 5ss
33.8
-1.8
3
40.2
39.7
Minor BPS
46.3
-0.3
3.6
77.35
39.1

Associated Gene:

Gene:
NIP7
Ensembl Gene ID:
ENSAPLG00000007407
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007677
20303487 - 20307327
3841