About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20308513_20308662_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20308513 - 20308662
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCCCGCT
5'SS Class:
weak_major
3'SS Sequence:
CTTCTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
GGGAACAAAATC
Flanking Amino Acid:
GQINFPTRETGFYQLCLDNQ
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.5
0.04
1.5
52
43.6
Major BPS
72.8
0.57
1
81
30.3
Major PPT
83.3
0.75
0.7
77.4
24.5
Minor 5ss
38.9
-1.3
3.5
57.7
46.5
Minor BPS
39
-0.8
1.9
42.78
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007408
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007686
20307847 - 20310708
2862