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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20317009_20317333_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20317009 - 20317333
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
ACCCTGGTAACT
Flanking Amino Acid:
RHMGKDPRIQKKKAELQAII
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
80.8
0.69
0.8
73.6
37
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
41.7
-0.5
2.5
58.49
45

Associated Gene:

Gene:
TERF2
Ensembl Gene ID:
ENSAPLG00000007421
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007712
20312256 - 20318986
6731