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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20317421_20317700_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20317421 - 20317700
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGACTT
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CGCAGTGTAACA
Flanking Amino Acid:
EPVRRMLKEAAVIVCIRNRE
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.8
41.9
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
90.2
0.9
0.6
85.5
21.7
Minor 5ss
40.8
-1
3.4
67.4
43
Minor BPS
40.9
-0.6
2.3
47.73
43

Associated Gene:

Gene:
TERF2
Ensembl Gene ID:
ENSAPLG00000007421
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007712
20312256 - 20318986
6731