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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20326155_20327942_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20326155 - 20327942
Intron Length:
1788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
GCCCTGCTAACT
Flanking Amino Acid:
PHDRKKEGSKDQNVTSSGQA
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
42.9
-0.4
2.2
58.08
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007518
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046581
20319586 - 20329085
9500