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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20356921_20368930_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20356921 - 20368930
Intron Length:
12010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTACACCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TACTTCTAAATT
Flanking Amino Acid:
GSPPPAVVAADASSAPSSSS
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.9
0.45
0.9
63.4
37.8
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
62.9
0.48
1.7
76.1
41.2

Associated Gene:

Gene:
NFAT5
Ensembl Gene ID:
ENSAPLG00000007702
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029038
20356863 - 20389865
33003
ENSAPLT00000008020
20356863 - 20390920
34058