About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20368469_20368930_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20368469 - 20368930
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTACACCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TACTTCTAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.1
76.3
32.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.9
0.45
0.9
63.4
37.8
Minor 5ss
30.1
-2.3
2.7
34.9
41.1
Minor BPS
62.9
0.48
1.7
76.1
41.2

Associated Gene:

Gene:
NFAT5
Ensembl Gene ID:
ENSAPLG00000007702
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041760
20368407 - 20390920
22514
ENSAPLT00000040122
20368407 - 20390920
22514
ENSAPLT00000043892
20362686 - 20387828
25143