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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20369249_20369352_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20369249 - 20369352
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTGGA
5'SS Class:
major
3'SS Sequence:
ACGAAACCCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
TGCCACGTAAAT
Flanking Amino Acid:
GVDWNQNRAAQRPGIKRRDC
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
59.1
40.1
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
46.9
-0.1
1
38.1
33.1
Minor 5ss
40.3
-1.1
3.1
53.7
44.7
Minor BPS
45.2
-0.2
2.2
64.73
44.9

Associated Gene:

Gene:
NFAT5
Ensembl Gene ID:
ENSAPLG00000007702
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041760
20368407 - 20390920
22514