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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20374168_20375741_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20374168 - 20375741
Intron Length:
1574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
TGCTGTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TCAGTCAAAATA
Flanking Amino Acid:
RTQQGFPTVKLEGHNEPVVL
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
75.8
0.64
1
65.8
41
Major PPT
76.1
0.59
1
72.5
42.4
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
43.7
-0.4
1.9
51.87
40.7

Associated Gene:

Gene:
NFAT5
Ensembl Gene ID:
ENSAPLG00000007702
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040122
20368407 - 20390920
22514
ENSAPLT00000029038
20356863 - 20389865
33003
ENSAPLT00000008020
20356863 - 20390920
34058
ENSAPLT00000043892
20362686 - 20387828
25143
ENSAPLT00000041760
20368407 - 20390920
22514