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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20377377_20378670_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20377377 - 20378670
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTCAATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTTTTCAATT
Flanking Amino Acid:
LQTPSSPILCTQPAGVPEIL
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.5
0.78
0.8
78.8
33.2
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
65.5
0.57
1.5
80.29
35.9

Associated Gene:

Gene:
NFAT5
Ensembl Gene ID:
ENSAPLG00000007702
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040122
20368407 - 20390920
22514
ENSAPLT00000029038
20356863 - 20389865
33003
ENSAPLT00000008020
20356863 - 20390920
34058
ENSAPLT00000043892
20362686 - 20387828
25143
ENSAPLT00000041760
20368407 - 20390920
22514