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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20378806_20378975_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20378806 - 20378975
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTGTG
5'SS Class:
major
3'SS Sequence:
AACTTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGCTTTTTAACT
Flanking Amino Acid:
TKVIFQENVSDENSWKAEAE
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
70
40.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.5
0.44
0.9
67.3
38.5
Minor 5ss
32.8
-2
3.1
39
40.4
Minor BPS
76.2
0.9
1.1
83.79
37.4

Associated Gene:

Gene:
NFAT5
Ensembl Gene ID:
ENSAPLG00000007702
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040122
20368407 - 20390920
22514
ENSAPLT00000029038
20356863 - 20389865
33003
ENSAPLT00000008020
20356863 - 20390920
34058
ENSAPLT00000043892
20362686 - 20387828
25143
ENSAPLT00000041760
20368407 - 20390920
22514