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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20387571_20387668_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20387571 - 20387668
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCACCCTC
5'SS Class:
weak_major
3'SS Sequence:
CTTCCCAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
CTTCCCAAAACA
Flanking Amino Acid:
QGSPSSQEQQHGRNARNCFS
Intron Amino Acid Position:
1302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.5
58
47.1
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
64.6
0.33
1
59.5
34.5
Minor 5ss
43.4
-0.7
3
60.1
44.4
Minor BPS
52.8
0.08
2
69.79
42.2

Associated Gene:

Gene:
NFAT5
Ensembl Gene ID:
ENSAPLG00000007702
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029038
20356863 - 20389865
33003