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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20387818_20388819_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20387818 - 20388819
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TGCTAATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTGTTCTTCACT
Flanking Amino Acid:
SGIFLFGIQNNCGQLLPSGP
Intron Amino Acid Position:
1384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
68.3
0.41
1
62.4
42.1
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
71.2
0.75
1.7
87.1
39

Associated Gene:

Gene:
NFAT5
Ensembl Gene ID:
ENSAPLG00000007702
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040122
20368407 - 20390920
22514
ENSAPLT00000029038
20356863 - 20389865
33003
ENSAPLT00000008020
20356863 - 20390920
34058
ENSAPLT00000041760
20368407 - 20390920
22514