Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20424113_20424450_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20424113 - 20424450

Intron Length:

338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

GCTGCTTTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

GAGCCCTGACCC

Flanking Amino Acid:

FKDPRPGFESGSKQGGSPGA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

76.2

39.9

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

75.5

0.57

0.9

72.3

37.7

Minor 5ss

-1.8

3.3

40.9

45.4

Minor BPS

47.9

-0.1

1.8

55.16

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037861

20413752 - 20430990

17239