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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20424715_20424794_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20424715 - 20424794
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
CCCGCGGTGACG
Flanking Amino Acid:
QTLFEDSFQQIMNMKPYDLR
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
72.1
0.5
1
65.8
35.9
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
36.5
-1.2
2.5
37.07
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008423
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037861
20413752 - 20430990
17239