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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20424884_20426011_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20424884 - 20426011
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CGCTCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CGCTGCTCACCG
Flanking Amino Acid:
EEGLDYGGIAREWFFLLSHE
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
73.5
0.53
0.8
64.7
36.5
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
41.4
-0.7
2.2
43.65
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008423
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037861
20413752 - 20430990
17239