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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_205587_207974_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
205587 - 207974
Intron Length:
2388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
ATTAGTTTACTT
Flanking Amino Acid:
RRIHNSDKPYRCRVCDFATT
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
77
0.61
0.8
74.4
36.5
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
48.7
-0
2
70.38
41.4

Associated Gene:

Gene:
ZNF507
Ensembl Gene ID:
ENSAPLG00000013158
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013700
201034 - 219415
18382
ENSAPLT00000044053
201034 - 219415
18382