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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20637204_20638024_F

Intron Information:

Intron Rank:
145857
Intron Class:
major
Intron Phase:
Intron Coordinates:
20637204 - 20638024
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TTCTCATAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTCTCATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
70
0.45
1
63.8
41
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
62.8
0.38
1.6
73.69
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028604
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038671
20637088 - 20640950
3863