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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20638079_20640458_F

Intron Information:

Intron Rank:
145858
Intron Class:
major
Intron Phase:
Intron Coordinates:
20638079 - 20640458
Intron Length:
2380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATCC
5'SS Class:
major
3'SS Sequence:
CTCATACCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AATTGTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.5
36.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
69
0.43
0.9
62.2
33.5
Minor 5ss
44.7
-0.6
2.8
60.7
43.8
Minor BPS
62.1
0.36
1.7
69.54
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028604
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038671
20637088 - 20640950
3863