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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20663_21426_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20663 - 21426
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
CKEKSAVHTDRFLQFLNSDP
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.4
0.95
0.6
91.3
20.2
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011417
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011896
3649 - 30288
26640