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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20714137_20715675_R

Intron Information:

Intron Rank:
151414
Intron Class:
major
Intron Phase:
Intron Coordinates:
20714137 - 20715675
Intron Length:
1539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
CTTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTTTTTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.3
67.1
44.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
92.3
0.95
0.6
88.4
21.3
Minor 5ss
33.5
-1.9
3.2
39.4
39.7
Minor BPS
61.6
0.36
1.5
70.9
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029010
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024612
20713061 - 20715831
2771