About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20724381_20751605_F

Intron Information:

Intron Rank:
150843
Intron Class:
major
Intron Phase:
Intron Coordinates:
20724381 - 20751605
Intron Length:
27225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ACATCCCACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTGTTCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
62
0.27
0.9
55.3
34.5
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
56.3
0.28
1.8
72.17
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031059
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028932
20723599 - 20751863
28265