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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20724381_20763212_F

Intron Information:

Intron Rank:
150844
Intron Class:
major
Intron Phase:
Intron Coordinates:
20724381 - 20763212
Intron Length:
38832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AATTATTAGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
76.8
0.6
0.7
72.5
25.9
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
48.1
-0
1.8
66.52
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031059
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036932
20723599 - 20764864
41266