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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2072556_2074726_R

Intron Information:

Intron Rank:
134955
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2072556 - 2074726
Intron Length:
2171

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCCTGG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
45
-0.2
3.2
69.2
37
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
66.5
0.6
1.9
89.31
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019952
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034535
2045482 - 2075045
29564