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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20748388_20748908_R

Intron Information:

Intron Rank:
136878
Intron Class:
major
Intron Phase:
Intron Coordinates:
20748388 - 20748908
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAAAT
5'SS Class:
major
3'SS Sequence:
TCTCTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTAGCTAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74
36.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
84.3
0.77
0.7
79.4
26.2
Minor 5ss
33.1
-1.9
3.4
48
47.7
Minor BPS
49.2
0.02
2
73.34
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021144
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046813
20748302 - 20749908
1607