About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20849637_20852091_F

Intron Information:

Intron Rank:
137757
Intron Class:
major
Intron Phase:
Intron Coordinates:
20849637 - 20852091
Intron Length:
2455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACAGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
89.6
0.89
0.6
88.7
20.5
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
47
-0.2
2
63.04
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024187
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042222
20848883 - 20852550
3668