Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20906116_20952989_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

20906116 - 20952989

Intron Length:

46874

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTTTTCTCC

5'SS Class:

weak_major

3'SS Sequence:

TCCCTGCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

TCTGACTCACCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.3

0.2

1.2

53.4

38.6

Major BPS

69.1

0.47

60.7

37.6

Major PPT

75.5

0.57

0.8

68.9

31.6

Minor 5ss

47.6

-0.2

2.3

61.3

43.1

Minor BPS

47.1

-0.1

2.1

68.84

47.6

Associated Gene:

Gene:

ZFHX3

Ensembl Gene ID:

ENSAPLG00000002327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039335

20906001 - 21065309

159309

ENSAPLT00000002384

20906001 - 21065360

159360