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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20955746_20959251_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20955746 - 20959251
Intron Length:
3506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATTTTCTGACCT
Flanking Amino Acid:
NPMATMTPSLVGGEIPLDMR
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
75.6
36.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
80.6
0.69
0.9
76.5
32.1
Minor 5ss
34.9
-1.7
3.4
45.9
49.3
Minor BPS
63.2
0.49
1.7
82.91
38.1

Associated Gene:

Gene:
ZFHX3
Ensembl Gene ID:
ENSAPLG00000002327
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039335
20906001 - 21065309
159309
ENSAPLT00000002384
20906001 - 21065360
159360