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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20959749_20990506_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20959749 - 20990506
Intron Length:
30758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTGTTCTTCACA
Flanking Amino Acid:
RHEASLKLYKHLQHHESGVE
Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
84.6
0.78
0.8
80
32.1
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
68.4
0.57
1.7
78.47
38.6

Associated Gene:

Gene:
ZFHX3
Ensembl Gene ID:
ENSAPLG00000002327
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039335
20906001 - 21065309
159309
ENSAPLT00000002384
20906001 - 21065360
159360