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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20990739_21030578_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20990739 - 21030578
Intron Length:
39840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATGT
Flanking Amino Acid:
TIRKCPAADAEEAIEDVEGP
Intron Amino Acid Position:
1147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.79
0.8
83.9
31.1
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
54.9
0.23
1.9
74.38
43.4

Associated Gene:

Gene:
ZFHX3
Ensembl Gene ID:
ENSAPLG00000002327
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002384
20906001 - 21065360
159360