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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_20990739_21042766_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20990739 - 21042766
Intron Length:
52028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATGTCCTGATGT
Flanking Amino Acid:
TIRKCPAADAAPASQAEKEL
Intron Amino Acid Position:
1147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
84.9
0.78
0.8
79.9
32.1
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
49.7
0.05
2
71.19
45.5

Associated Gene:

Gene:
ZFHX3
Ensembl Gene ID:
ENSAPLG00000002327
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039335
20906001 - 21065309
159309