About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21030687_21042766_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21030687 - 21042766
Intron Length:
12080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATGTCCTGATGT
Flanking Amino Acid:
GGDKDQSKWTAPASQAEKEL
Intron Amino Acid Position:
1183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
84.9
0.78
0.8
79.9
32.1
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
49.7
0.05
2
71.19
45.5

Associated Gene:

Gene:
ZFHX3
Ensembl Gene ID:
ENSAPLG00000002327
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002384
20906001 - 21065360
159360