Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21042901_21043101_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21042901 - 21043101

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAACAAT

U12 Branch Point Sequence:

AATTGCACAATT

Flanking Amino Acid:

KTSEETKSEQMYQCPYCKYS

Intron Amino Acid Position:

1228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.7

33.7

Major BPS

57.4

0.18

1.3

65.4

Major PPT

85.8

0.81

0.8

80.7

31.4

Minor 5ss

32.8

-2

2.9

39.4

46.1

Minor BPS

46.8

-0.1

2.1

69.13

41.6

Associated Gene:

Gene:

ZFHX3

Ensembl Gene ID:

ENSAPLG00000002327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039335

20906001 - 21065309

159309

ENSAPLT00000002384

20906001 - 21065360

159360