Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21059272_21063708_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21059272 - 21063708

Intron Length:

4437

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTATG

5'SS Class:

strong_major

3'SS Sequence:

CTCCCTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

GACTCCTCACCT

Flanking Amino Acid:

SLPGFTPSNTALTSPKPNLM

Intron Amino Acid Position:

3156

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.79

0.9

77.8

38.7

Major BPS

72.4

0.56

73.5

32.5

Major PPT

81.8

0.72

0.7

76.1

Minor 5ss

32.5

-2

3.1

41.1

45.5

Minor BPS

0.2

1.9

70.35

Associated Gene:

Gene:

ZFHX3

Ensembl Gene ID:

ENSAPLG00000002327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039335

20906001 - 21065309

159309

ENSAPLT00000002384

20906001 - 21065360

159360