Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21085360_21090774_F

Intron Information:

Intron Rank:

131275

Intron Class:

major

Intron Phase:

Intron Coordinates:

21085360 - 21090774

Intron Length:

5415

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGTTC

5'SS Class:

major

3'SS Sequence:

TTGTCTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAC

U12 Branch Point Sequence:

TATTGTTCACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

1.1

73.9

Major BPS

82.3

0.8

83.6

25.8

Major PPT

84.1

0.77

0.8

81.8

30.2

Minor 5ss

46.8

-0.3

3.2

67.4

Minor BPS

46.5

-0.1

2.1

68.76

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020515

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042198

21084853 - 21092051

7199