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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21097628_21098772_F

Intron Information:

Intron Rank:
123673
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
21097628 - 21098772
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATGCT
5'SS Class:
major
3'SS Sequence:
TAAACTGTCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.9
34.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
59.9
0.22
1
50.8
43.2
Minor 5ss
34.8
-1.7
3.3
47.1
43.6
Minor BPS
68.5
0.66
1.6
84.25
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016685
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044926
21096586 - 21120703
24118