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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21121564_21121761_F

Intron Information:

Intron Rank:
138331
Intron Class:
major
Intron Phase:
Intron Coordinates:
21121564 - 21121761
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTTAGTGAC
5'SS Class:
major
3'SS Sequence:
CTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.2
61.6
37.6
Major BPS
80
0.75
1
78.6
31
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
30.6
-2.2
3
33
35.5
Minor BPS
65.4
0.56
1.5
77.84
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024430
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033267
21121104 - 21123357
2254