About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21121846_21123258_F


Intron Information:

Intron Rank:
138332

Intron Class:
major

Intron Phase:

Intron Coordinates:
21121846 - 21123258

Intron Length:
1413

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCA|GTGAGTTTC

5'SS Class:
major

3'SS Sequence:
GGTTCTTTTACAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTAAGAA

U12 Branch Point Sequence:
GGTTCTTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74
0.57
1
72.4
33.5

Major BPS
58.2
0.21
1.1
55.4
40.4

Major PPT
82.6
0.73
0.9
76
38

Minor 5ss
41.5
-0.9
3
58.2
40.5

Minor BPS
65.9
0.49
1.6
72.95
38.4

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21121104 - 21123357
2254